Implement a PluginLoader, which can load plugin jars.

src/org/nwapw/abacus/Abacus.java

@@ -25,6 +25,7 @@ public class Abacus {
         manager.addInstantiated(new StandardPlugin(manager));
         mainUi = new Window(manager);
         mainUi.setVisible(true);
+        manager.load();
     }
 
     public static void main(String[] args){

src/org/nwapw/abacus/function/Operator.java

@@ -0,0 +1,57 @@
+package org.nwapw.abacus.function;
+
+/**
+ * A class that represents a single infix operator.
+ */
+public class Operator {
+
+    /**
+     * The associativity of the operator.
+     */
+    private OperatorAssociativity associativity;
+    /**
+     * The precedence of the operator.
+     */
+    private int precedence;
+    /**
+     * The function that is called by this operator.
+     */
+    private Function function;
+
+    /**
+     * Creates a new operator with the given parameters.
+     * @param associativity the associativity of the operator.
+     * @param precedence the precedence of the operator.
+     * @param function the function that the operator calls.
+     */
+    public Operator(OperatorAssociativity associativity, int precedence, Function function){
+        this.associativity = associativity;
+        this.precedence = precedence;
+        this.function = function;
+    }
+
+    /**
+     * Gets the operator's associativity.
+     * @return the associativity.
+     */
+    public OperatorAssociativity getAssociativity() {
+        return associativity;
+    }
+
+    /**
+     * Gets the operator's precedence.
+     * @return the precedence.
+     */
+    public int getPrecedence() {
+        return precedence;
+    }
+
+    /**
+     * Gets the operator's function.
+     * @return the function.
+     */
+    public Function getFunction() {
+        return function;
+    }
+
+}

src/org/nwapw/abacus/function/OperatorAssociativity.java

@@ -1,4 +1,4 @@
-package org.nwapw.abacus.tree;
+package org.nwapw.abacus.function;
 
 /**
  * Enum to represent the associativity of an operator.

src/org/nwapw/abacus/lexing/Lexer.java

@@ -5,9 +5,7 @@ import org.nwapw.abacus.lexing.pattern.Match;
 import org.nwapw.abacus.lexing.pattern.Pattern;
 import org.nwapw.abacus.lexing.pattern.PatternNode;
 
-import java.util.ArrayList;
-import java.util.Comparator;
-import java.util.HashSet;
+import java.util.*;
 
 /**
  * A lexer that can generate tokens of a given type given a list of regular expressions
@@ -16,16 +14,53 @@ import java.util.HashSet;
  */
 public class Lexer<T> {
 
+    /**
+     * An entry that represents a pattern that has been registered with the lexer.
+     * @param <T> the type used to identify the pattern.
+     */
+    private static class PatternEntry<T>{
+        /**
+         * The name of the entry.
+         */
+        public String name;
+        /**
+         * The id of the entry.
+         */
+        public T id;
+
+        /**
+         * Creates a new pattern entry with the given name and id.
+         * @param name the name of the pattern entry.
+         * @param id the id of the pattern entry.
+         */
+        public PatternEntry(String name, T id){
+            this.name = name;
+            this.id = id;
+        }
+
+        @Override
+        public int hashCode() {
+            return Objects.hash(name, id);
+        }
+
+        @Override
+        public boolean equals(Object obj) {
+            return obj instanceof PatternEntry &&
+                    ((PatternEntry) obj).name.equals(name) &&
+                    ((PatternEntry) obj).id.equals(id);
+        }
+    }
+
     /**
      * The registered patterns.
      */
-    private ArrayList<Pattern<T>> patterns;
+    private HashMap<PatternEntry<T>, Pattern<T>> patterns;
 
     /**
      * Creates a new lexer with no registered patterns.
      */
     public Lexer(){
-        patterns = new ArrayList<>();
+        patterns = new HashMap<>();
     }
 
     /**
@@ -35,7 +70,16 @@ public class Lexer<T> {
      */
     public void register(String pattern, T id){
         Pattern<T> compiledPattern = new Pattern<>(pattern, id);
-        if(compiledPattern.getHead() != null) patterns.add(compiledPattern);
+        if(compiledPattern.getHead() != null) patterns.put(new PatternEntry<>(pattern, id), compiledPattern);
+    }
+
+    /**
+     * Unregisters a pattern.
+     * @param pattern the pattern to unregister
+     * @param id the ID by which to identify the pattern.
+     */
+    public void unregister(String pattern, T id){
+        patterns.remove(new PatternEntry<>(pattern, id));
     }
 
     /**
@@ -50,7 +94,7 @@ public class Lexer<T> {
         HashSet<PatternNode<T>> currentSet = new HashSet<>();
         HashSet<PatternNode<T>> futureSet = new HashSet<>();
         int index = startAt;
-        for(Pattern<T> pattern : patterns){
+        for(Pattern<T> pattern : patterns.values()){
             pattern.getHead().addInto(currentSet);
         }
         while(!currentSet.isEmpty()){

src/org/nwapw/abacus/lexing/pattern/Pattern.java

@@ -235,4 +235,22 @@ public class Pattern<T> {
     public PatternNode<T> getHead() {
         return head;
     }
+
+    /**
+     * Removes all characters that are considered "special" from
+     * the given string.
+     * @param from the string to sanitize.
+     * @return the resulting string.
+     */
+    public static String sanitize(String from){
+        Pattern<Integer> pattern = new Pattern<>("", 0);
+        from = from.replace(".", "\\.");
+        from = from.replace("|", "\\|");
+        from = from.replace("(", "\\(");
+        from = from.replace(")", "\\)");
+        for(Character key : pattern.operations.keySet()){
+            from = from.replace("" + key, "\\" + key);
+        }
+        return from;
+    }
 }

src/org/nwapw/abacus/number/NaiveNumber.java

@@ -29,7 +29,7 @@ public class NaiveNumber implements NumberInterface {
 
     @Override
     public int precision() {
-        return 15;
+        return 18;
     }
 
     @Override

src/org/nwapw/abacus/number/NumberInterface.java

@@ -49,8 +49,8 @@ public interface NumberInterface {
 
     /**
      * Raises this number to an integer power.
-     * @param exponent
-     * @return
+     * @param exponent the exponent to which to take the number.
+     * @return the resulting value.
      */
     NumberInterface intPow(int exponent);
 

src/org/nwapw/abacus/plugin/ClassFinder.java

@@ -0,0 +1,65 @@
+package org.nwapw.abacus.plugin;
+
+import java.io.BufferedInputStream;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Enumeration;
+import java.util.HashMap;
+import java.util.jar.JarEntry;
+import java.util.jar.JarFile;
+import java.util.zip.ZipInputStream;
+
+public class ClassFinder extends ClassLoader{
+
+    ArrayList<Class> classes;
+
+    public ClassFinder(){
+        super(ClassFinder.class.getClassLoader());
+        classes=new ArrayList();
+    }
+    public Class loadClass(String className) throws ClassNotFoundException{
+        return findClass(className);
+    }
+    public ArrayList<String> loadClass(File jarLocation) throws ClassNotFoundException, IOException{
+        return addJar(jarLocation);
+    }
+    public ArrayList<String> addJar(File jarLocation) throws IOException {
+        JarFile jarFolder = new JarFile(jarLocation);
+        Enumeration jarList = jarFolder.entries();
+        HashMap classSize = new HashMap();
+        HashMap classContent = new HashMap();
+        ArrayList<String> classNames = new ArrayList();
+        JarEntry tempJar;
+        ZipInputStream zipStream = new ZipInputStream(new BufferedInputStream(new FileInputStream(jarLocation)));
+        while(jarList.hasMoreElements()){
+            tempJar = (JarEntry)jarList.nextElement();
+            zipStream.getNextEntry();
+            if(!tempJar.isDirectory()) {
+                if (tempJar.getName().substring(tempJar.getName().indexOf('.')).equals(".class") && (tempJar.getName().length() < 9 || !tempJar.getName().substring(0, 9).equals("META-INF/"))) {
+                    int size = (int)tempJar.getSize();
+                    classSize.put(tempJar.getName(),new Integer((int)tempJar.getSize()));
+                    byte[] bytes = new byte[size];
+                    zipStream.read(bytes,0,size);
+                    classContent.put(tempJar.getName(),bytes);
+                    classNames.add(tempJar.getName());
+                }
+            }
+        }
+        jarFolder.close();
+        for(String name:classNames) {
+            classes.add(super.defineClass(name, (byte[]) classContent.get(name), 0, (int) classSize.get(name)));
+        }
+        return classNames;
+    }
+    public ArrayList<Class> getClasses(){
+        return classes;
+    }
+    public Class getClass(int number){
+        return classes.get(number);
+    }
+    public void delClasses(){
+        classes=new ArrayList();
+    }
+}

src/org/nwapw/abacus/plugin/Plugin.java

@@ -1,8 +1,10 @@
 package org.nwapw.abacus.plugin;
 
 import org.nwapw.abacus.function.Function;
+import org.nwapw.abacus.function.Operator;
 
 import java.util.HashMap;
+import java.util.Set;
 
 /**
  * A plugin class that can be externally implemented and loaded via the
@@ -17,11 +19,19 @@ public abstract class Plugin {
      * A hash map of functions mapped to their string names.
      */
     private HashMap<String, Function> functions;
+    /**
+     * A hash map of operators mapped to their string names.
+     */
+    private HashMap<String, Operator> operators;
     /**
      * The plugin manager in which to search for functions
      * not inside this package,
      */
     private PluginManager manager;
+    /**
+     * Whether this plugin has been loaded.
+     */
+    private boolean enabled;
 
     private Plugin(){ }
 
@@ -32,15 +42,24 @@ public abstract class Plugin {
     public Plugin(PluginManager manager) {
         this.manager = manager;
         functions = new HashMap<>();
+        operators = new HashMap<>();
+        enabled = false;
     }
 
     /**
-     * Determines whether the current plugin provides the given function name.
-     * @param functionName the name of the function provided.
-     * @return true of the function exists, false if it doesn't.
+     * Gets the list of functions provided by this plugin.
+     * @return the list of registered functions.
      */
-    public final boolean hasFunction(String functionName) {
-        return functions.containsKey(functionName);
+    public final Set<String> providedFunctions(){
+        return functions.keySet();
+    }
+
+    /**
+     * Gets the list of functions provided by this plugin.
+     * @return the list of registered functions.
+     */
+    public final Set<String> providedOperators(){
+        return operators.keySet();
     }
 
     /**
@@ -52,37 +71,91 @@ public abstract class Plugin {
         return functions.get(functionName);
     }
 
+    /**
+     * Gets an operator under the given operator name.
+     * @param operatorName the name of the operator to get.
+     * @return the operator, or null if this plugin doesn't provide it.
+     */
+    public final Operator getOperator(String operatorName) {
+        return operators.get(operatorName);
+    }
+
+    /**
+     * Enables the function, loading the necessary instances
+     * of functions.
+     */
+    public final void enable(){
+        if(enabled) return;
+        onEnable();
+        enabled = true;
+    }
+
+    /**
+     * Disables the plugin, clearing loaded data store by default
+     * and calling its disable() method.
+     */
+    public final void disable(){
+        if(!enabled) return;
+        onDisable();
+        functions.clear();
+        operators.clear();
+        enabled = false;
+    }
+
     /**
      * To be used in load(). Registers a function abstract class with the
      * plugin internally, which makes it accessible to the plugin manager.
      * @param name the name to register by.
      * @param toRegister the function implementation.
-     * @return true if the function was registered successfully, false if not.
      */
-    protected final boolean registerFunction(String name, Function toRegister) {
-        if(functionFor(name) == null){
-            functions.put(name, toRegister);
-            return true;
-        }
-        return false;
+    protected final void registerFunction(String name, Function toRegister) {
+        functions.put(name, toRegister);
+    }
+
+    /**
+     * To be used in load(). Registers an operator abstract class
+     * with the plugin internally, which makes it accessible to
+     * the plugin manager.
+     * @param name the name of the operator.
+     * @param operator the operator to register.
+     */
+    protected final void registerOperator(String name, Operator operator) {
+        operators.put(name, operator);
     }
 
     /**
      * Searches the PluginManager for the given function name.
      * This can be used by the plugins internally in order to call functions
      * they do not provide.
-     * @param name then name for which to search
+     * @param name the name for which to search
      * @return the resulting function, or null if none was found for that name.
      */
     protected final Function functionFor(String name) {
         return manager.functionFor(name);
     }
 
+    /**
+     * Searches the PluginManager for the given operator name.
+     * This can be used by the plugins internally in order to call
+     * operations they do not provide.
+     * @param name the name for which to search
+     * @return the resulting operator, or null if none was found for that name.
+     */
+    protected final Operator operatorFor(String name) {
+        return manager.operatorFor(name);
+    }
+
     /**
      * Abstract method to be overridden by plugin implementation, in which the plugins
      * are supposed to register the functions they provide and do any other
      * necessary setup.
      */
-    public abstract void load();
+    public abstract void onEnable();
+
+    /**
+     * Abstract method overridden by the plugin implementation, in which the plugins
+     * are supposed to dispose of loaded functions, operators, and macros.
+     */
+    public abstract void onDisable();
 
 }

src/org/nwapw/abacus/plugin/PluginListener.java

@@ -0,0 +1,20 @@
+package org.nwapw.abacus.plugin;
+
+/**
+ * A listener that responds to changes in the PluginManager.
+ */
+public interface PluginListener {
+
+    /**
+     * Called when the PluginManager loads plugins.
+     * @param manager the manager that fired the event.
+     */
+    public void onLoad(PluginManager manager);
+
+    /**
+     * Called when the PluginManager unloads all its plugins.
+     * @param manager the manager that fired the event.
+     */
+    public void onUnload(PluginManager manager);
+
+}

src/org/nwapw/abacus/plugin/PluginLoader.java

@@ -0,0 +1,106 @@
+package org.nwapw.abacus.plugin;
+
+import java.io.File;
+import java.io.IOException;
+import java.net.URL;
+import java.net.URLClassLoader;
+import java.util.ArrayList;
+import java.util.Properties;
+import java.util.jar.JarFile;
+
+/**
+ * A plugin loader, used to scan a directory for
+ * plugins and load them into classes that can then be
+ * used by the plugin manager.
+ */
+public class PluginLoader {
+
+    /**
+     * An internal class that represents a Jar file that
+     * has been founded, but not loaded.
+     */
+    private static final class PluginEntry {
+        String mainClass;
+        File jarPath;
+    }
+
+    /**
+     * The path which to search for plugins.
+     */
+    private File path;
+    /**
+     * The array of loaded plugin main classes.
+     */
+    private ArrayList<Class<?>> foundMainClasses;
+
+    /**
+     * Creates a new plugin loader at the given path.
+     * @param path the path which to search for plugins.
+     */
+    public PluginLoader(File path) {
+        this.path = path;
+    }
+
+    /**
+     * Loads all the plugin classes that have been found.
+     * @return the list of loaded classes.
+     * @throws IOException thrown when loading classes from URL fails.
+     * @throws ClassNotFoundException thrown when the class specified in plugin.properties is missing.
+     */
+    private ArrayList<Class<?>> loadPluginClasses() throws IOException, ClassNotFoundException {
+        ArrayList<Class<?>> foundMainClasses = new ArrayList<>();
+        for(PluginEntry entry : findPlugins()){
+            if(entry.mainClass == null) continue;
+            ClassLoader loader = URLClassLoader.newInstance(
+                    new URL[]{ entry.jarPath.toURI().toURL() },
+                    getClass().getClassLoader());
+            Class<?> loadedClass = loader.loadClass(entry.mainClass);
+            if(!Plugin.class.isAssignableFrom(loadedClass)) continue;
+            foundMainClasses.add(loadedClass);
+        }
+        return foundMainClasses;
+    }
+
+    /**
+     * Find all jars that have a plugin.properties file in the plugin folder.
+     * @return the list of all plugin entries, with their main class names and the jars files.
+     * @throws IOException thrown if reading the jar file fails
+     */
+    private ArrayList<PluginEntry> findPlugins() throws IOException {
+        ArrayList<PluginEntry> pluginEntries = new ArrayList<>();
+        File[] childFiles = path.listFiles();
+
+        if(childFiles == null) return pluginEntries;
+        for(File file : childFiles){
+            if(!file.isFile() || !file.getName().endsWith(".jar")) continue;
+            JarFile jarFile = new JarFile(file);
+            if(jarFile.getEntry("plugin.properties") == null) continue;
+            Properties properties = new Properties();
+            properties.load(jarFile.getInputStream(jarFile.getEntry("plugin.properties")));
+
+            PluginEntry entry = new PluginEntry();
+            entry.mainClass = properties.getProperty("mainClass");
+            entry.jarPath = file;
+            pluginEntries.add(entry);
+        }
+        return pluginEntries;
+    }
+
+    /**
+     * Loads all valid plugins and keeps track of them.
+     * @throws IOException thrown if loading from jar files fails.
+     * @throws ClassNotFoundException thrown if class specified in plugin.properties doesn't exist.
+     */
+    public void loadValidPlugins() throws IOException, ClassNotFoundException {
+        foundMainClasses = loadPluginClasses();
+    }
+
+    /**
+     * Gets the list of all the plugins that have last been loaded.
+     * @return the list of loaded class files.
+     */
+    public ArrayList<Class<?>> getFoundMainClasses() {
+        return foundMainClasses;
+    }
+
+}

src/org/nwapw/abacus/plugin/PluginManager.java

@@ -1,10 +1,10 @@
 package org.nwapw.abacus.plugin;
 
 import org.nwapw.abacus.function.Function;
+import org.nwapw.abacus.function.Operator;
 
 import java.lang.reflect.InvocationTargetException;
-import java.util.ArrayList;
-import java.util.HashMap;
+import java.util.*;
 
 /**
  * A class that controls instances of plugins, allowing for them
@@ -21,6 +21,23 @@ public class PluginManager {
      * that is, found in a plugin and returned.
      */
     private HashMap<String, Function> cachedFunctions;
+    /**
+     * List of operators tha have been cached,
+     * that is, found in a plugin and returned.
+     */
+    private HashMap<String, Operator> cachedOperators;
+    /**
+     * List of all functions loaded by the plugins.
+     */
+    private HashSet<String> allFunctions;
+    /**
+     * List of all operators loaded by the plugins.
+     */
+    private HashSet<String> allOperators;
+    /**
+     * The list of plugin listeners attached to this instance.
+     */
+    private HashSet<PluginListener> listeners;
 
     /**
      * Creates a new plugin manager.
@@ -28,27 +45,58 @@ public class PluginManager {
     public PluginManager(){
         plugins = new ArrayList<>();
         cachedFunctions = new HashMap<>();
+        cachedOperators = new HashMap<>();
+        allFunctions = new HashSet<>();
+        allOperators = new HashSet<>();
+        listeners = new HashSet<>();
     }
 
+    /**
+     * Searches the plugin list for a certain value, retrieving the Plugin's
+     * list of items of the type using the setFunction and getting the value
+     * of it is available via getFunction. If the value is contained
+     * in the cache, it returns the cached value instead.
+     * @param plugins the plugin list to search.
+     * @param cache the cache to use
+     * @param setFunction the function to retrieve a set of available T's from the plugin
+     * @param getFunction the function to get the T value under the given name
+     * @param name the name to search for
+     * @param <T> the type of element being search
+     * @return the retrieved element, or null if it was not found.
+     */
+    private static <T> T searchCached(Collection<Plugin> plugins, Map<String, T> cache,
+                                      java.util.function.Function<Plugin, Set<String>> setFunction,
+                                      java.util.function.BiFunction<Plugin, String, T> getFunction,
+                                      String name){
+        if(cache.containsKey(name)) return cache.get(name);
+
+        T loadedValue = null;
+        for(Plugin plugin : plugins){
+            if(setFunction.apply(plugin).contains(name)){
+                loadedValue = getFunction.apply(plugin, name);
+                break;
+            }
+        }
+
+        cache.put(name, loadedValue);
+        return loadedValue;
+    }
     /**
      * Gets a function under the given name.
      * @param name the name of the function
      * @return the function under the given name.
      */
     public Function functionFor(String name){
-        if(cachedFunctions.containsKey(name)) {
-            return cachedFunctions.get(name);
-        }
+        return searchCached(plugins, cachedFunctions, Plugin::providedFunctions, Plugin::getFunction, name);
+    }
 
-        Function loadedFunction = null;
-        for(Plugin plugin : plugins){
-            if(plugin.hasFunction(name)){
-                loadedFunction = plugin.getFunction(name);
-                break;
-            }
-        }
-        cachedFunctions.put(name, loadedFunction);
-        return loadedFunction;
+    /**
+     * Gets an operator under the given name.
+     * @param name the name of the operator.
+     * @return the operator under the given name.
+     */
+    public Operator operatorFor(String name){
+        return searchCached(plugins, cachedOperators, Plugin::providedOperators, Plugin::getOperator, name);
     }
 
     /**
@@ -56,8 +104,6 @@ public class PluginManager {
      * @param plugin the plugin to add.
      */
     public void addInstantiated(Plugin plugin){
-        plugin.load();
-        cachedFunctions.clear();
         plugins.add(plugin);
     }
 
@@ -75,4 +121,66 @@ public class PluginManager {
         }
     }
 
+    /**
+     * Loads all the plugins in the PluginManager.
+     */
+    public void load(){
+        for(Plugin plugin : plugins) plugin.enable();
+        for(Plugin plugin : plugins){
+            allFunctions.addAll(plugin.providedFunctions());
+            allOperators.addAll(plugin.providedOperators());
+        }
+        listeners.forEach(e -> e.onLoad(this));
+    }
+
+    /**
+     * Unloads all the plugins in the PluginManager.
+     */
+    public void unload(){
+        for(Plugin plugin : plugins) plugin.disable();
+        allFunctions.clear();
+        allOperators.clear();
+        listeners.forEach(e -> e.onUnload(this));
+    }
+
+    /**
+     * Reloads all the plugins in the PluginManager.
+     */
+    public void reload(){
+        unload();
+        reload();
+    }
+
+    /**
+     * Gets all the functions loaded by the Plugin Manager.
+     * @return the set of all functions that were loaded.
+     */
+    public HashSet<String> getAllFunctions() {
+        return allFunctions;
+    }
+
+    /**
+     * Gets all the operators loaded by the Plugin Manager.
+     * @return the set of all operators that were loaded.
+     */
+    public HashSet<String> getAllOperators() {
+        return allOperators;
+    }
+
+    /**
+     * Adds a plugin change listener to this plugin manager.
+     * @param listener the listener to add.
+     */
+    public void addListener(PluginListener listener){
+        listeners.add(listener);
+    }
+
+    /**
+     * Remove the plugin change listener from this plugin manager.
+     * @param listener the listener to remove.
+     */
+    public void removeListener(PluginListener listener){
+        listeners.remove(listener);
+    }
+    
 }

src/org/nwapw/abacus/plugin/StandardPlugin.java

@@ -1,9 +1,14 @@
 package org.nwapw.abacus.plugin;
 
 import org.nwapw.abacus.function.Function;
+import org.nwapw.abacus.function.Operator;
+import org.nwapw.abacus.function.OperatorAssociativity;
 import org.nwapw.abacus.number.NaiveNumber;
 import org.nwapw.abacus.number.NumberInterface;
 
+import javax.print.attribute.standard.MediaSize;
+import java.util.ArrayList;
+import java.util.HashMap;
 import java.util.function.BiFunction;
 
 /**
@@ -17,8 +22,8 @@ public class StandardPlugin extends Plugin {
     }
 
     @Override
-    public void load() {
-        registerFunction("+", new Function() {
+    public void onEnable() {
+        registerOperator("+", new Operator(OperatorAssociativity.LEFT, 0, new Function() {
             @Override
             protected boolean matchesParams(NumberInterface[] params) {
                 return params.length >= 1;
@@ -32,9 +37,9 @@ public class StandardPlugin extends Plugin {
                 }
                 return sum;
             }
-        });
+        }));
 
-        registerFunction("-", new Function() {
+        registerOperator("-", new Operator(OperatorAssociativity.LEFT, 0, new Function() {
             @Override
             protected boolean matchesParams(NumberInterface[] params) {
                 return params.length == 2;
@@ -44,9 +49,9 @@ public class StandardPlugin extends Plugin {
             protected NumberInterface applyInternal(NumberInterface[] params) {
                 return params[0].subtract(params[1]);
             }
-        });
+        }));
 
-        registerFunction("*", new Function() {
+        registerOperator("*", new Operator(OperatorAssociativity.LEFT, 1, new Function() {
             @Override
             protected boolean matchesParams(NumberInterface[] params) {
                 return params.length >= 1;
@@ -60,9 +65,9 @@ public class StandardPlugin extends Plugin {
                 }
                 return product;
             }
-        });
+        }));
 
-        registerFunction("/", new Function() {
+        registerOperator("/", new Operator(OperatorAssociativity.LEFT, 1, new Function() {
             @Override
             protected boolean matchesParams(NumberInterface[] params) {
                 return params.length == 2;
@@ -72,9 +77,22 @@ public class StandardPlugin extends Plugin {
             protected NumberInterface applyInternal(NumberInterface[] params) {
                 return params[0].divide(params[1]);
             }
-        });
+        }));
+
+        registerOperator("^", new Operator(OperatorAssociativity.RIGHT, 2, new Function() {
+            @Override
+            protected boolean matchesParams(NumberInterface[] params) {
+                return params.length == 2;
+            }
+
+            @Override
+            protected NumberInterface applyInternal(NumberInterface[] params) {
+                return StandardPlugin.this.getFunction("exp").apply(StandardPlugin.this.getFunction("ln").apply(params[0]).multiply(params[1]));
+            }
+        }));
 
         registerFunction("!", new Function() {
+            //private HashMap<Class<? extends NumberInterface>, ArrayList<NumberInterface>> storedList = new HashMap<Class<? extends NumberInterface>, ArrayList<NumberInterface>>();
             @Override
             protected boolean matchesParams(NumberInterface[] params) {
                 return params.length == 1;
@@ -92,6 +110,23 @@ public class StandardPlugin extends Plugin {
                     factorial = factorial.multiply(multiplier);
                 }
                 return factorial;
+                /*if(!storedList.containsKey(params[0].getClass())){
+                    storedList.put(params[0].getClass(), new ArrayList<NumberInterface>());
+                    storedList.get(params[0].getClass()).add(NaiveNumber.ONE.promoteTo(params[0].getClass()));
+                    storedList.get(params[0].getClass()).add(NaiveNumber.ONE.promoteTo(params[0].getClass()));
+                }*/
+            }
+        });
+
+        registerFunction("abs", new Function() {
+            @Override
+            protected boolean matchesParams(NumberInterface[] params) {
+                return params.length == 1;
+            }
+
+            @Override
+            protected NumberInterface applyInternal(NumberInterface[] params) {
+                return params[0].multiply((new NaiveNumber(params[0].signum())).promoteTo(params[0].getClass()));
             }
         });
 
@@ -103,16 +138,114 @@ public class StandardPlugin extends Plugin {
 
             @Override
             protected NumberInterface applyInternal(NumberInterface[] params) {
-                return sumSeries(params[0], StandardPlugin.this::getExpSeriesTerm, getNTermsExp(getMaxError(params[0]), params[0]));
+                boolean takeReciprocal = params[0].signum() == -1;
+                params[0] = StandardPlugin.this.getFunction("abs").apply(params[0]);
+                NumberInterface sum = sumSeries(params[0], StandardPlugin.this::getExpSeriesTerm, getNTermsExp(getMaxError(params[0]), params[0]));
+                if(takeReciprocal){
+                    sum = NaiveNumber.ONE.promoteTo(sum.getClass()).divide(sum);
+                }
+                return sum;
             }
         });
+
+        registerFunction("ln", new Function() {
+            @Override
+            protected boolean matchesParams(NumberInterface[] params) {
+                return params.length == 1;
+            }
+
+            @Override
+            protected NumberInterface applyInternal(NumberInterface[] params) {
+                NumberInterface param = params[0];
+                int powersOf2 = 0;
+                while(StandardPlugin.this.getFunction("abs").apply(param.subtract(NaiveNumber.ONE.promoteTo(param.getClass()))).compareTo((new NaiveNumber(0.1)).promoteTo(param.getClass())) >= 0){
+                    if(param.subtract(NaiveNumber.ONE.promoteTo(param.getClass())).signum() == 1) {
+                        param = param.divide(new NaiveNumber(2).promoteTo(param.getClass()));
+                        powersOf2++;
+                        if(param.subtract(NaiveNumber.ONE.promoteTo(param.getClass())).signum() != 1) {
+                            break;
+                            //No infinite loop for you.
+                        }
+                    }
+                    else {
+                        param = param.multiply(new NaiveNumber(2).promoteTo(param.getClass()));
+                        powersOf2--;
+                        if(param.subtract(NaiveNumber.ONE.promoteTo(param.getClass())).signum() != 1) {
+                            break;
+                            //No infinite loop for you.
+                        }
+                    }
+                }
+                return getLog2(param).multiply((new NaiveNumber(powersOf2)).promoteTo(param.getClass())).add(getLogPartialSum(param));
+            }
+
+            /**
+             * Returns the partial sum of the Taylor series for logx (around x=1).
+             * Automatically determines the number of terms needed based on the precision of x.
+             * @param x value at which the series is evaluated. 0 < x < 2. (x=2 is convergent but impractical.)
+             * @return the partial sum.
+             */
+            private NumberInterface getLogPartialSum(NumberInterface x){
+                NumberInterface maxError = StandardPlugin.this.getMaxError(x);
+                x = x.subtract(NaiveNumber.ONE.promoteTo(x.getClass())); //Terms used are for log(x+1).
+                NumberInterface currentTerm = x, sum = x;
+                int n = 1;
+                while(StandardPlugin.this.getFunction("abs").apply(currentTerm).compareTo(maxError) > 0){
+                    n++;
+                    currentTerm = currentTerm.multiply(x).multiply((new NaiveNumber(n-1)).promoteTo(x.getClass())).divide((new NaiveNumber(n)).promoteTo(x.getClass())).negate();
+                    sum = sum.add(currentTerm);
+                }
+                return sum;
+            }
+
+            /**
+             * Returns natural log of 2 to the required precision of the class of number.
+             * @param number a number of the same type as the return type. (Used for precision.)
+             * @return the value of log(2) with the appropriate precision.
+             */
+            private NumberInterface getLog2(NumberInterface number){
+                NumberInterface maxError = StandardPlugin.this.getMaxError(number);
+                //NumberInterface errorBound = (new NaiveNumber(1)).promoteTo(number.getClass());
+                //We'll use the series \sigma_{n >= 1) ((1/3^n + 1/4^n) * 1/n)
+                //In the following, a=1/3^n, b=1/4^n, c = 1/n.
+                //a is also an error bound.
+                NumberInterface a = (new NaiveNumber(1)).promoteTo(number.getClass()), b = a, c = a;
+                NumberInterface sum = NaiveNumber.ZERO.promoteTo(number.getClass());
+                int n = 0;
+                while(a.compareTo(maxError) >= 1){
+                    n++;
+                    a = a.divide((new NaiveNumber(3)).promoteTo(number.getClass()));
+                    b = b.divide((new NaiveNumber(4)).promoteTo(number.getClass()));
+                    c = NaiveNumber.ONE.promoteTo(number.getClass()).divide((new NaiveNumber(n)).promoteTo(number.getClass()));
+                    sum = sum.add(a.add(b).multiply(c));
+                }
+                return sum;
+            }
+        });
+
+        registerFunction("sqrt", new Function() {
+            @Override
+            protected boolean matchesParams(NumberInterface[] params) {
+                return params.length == 1;
+            }
+
+            @Override
+            protected NumberInterface applyInternal(NumberInterface[] params) {
+                return StandardPlugin.this.getFunction("pow").apply(params[0], (new NaiveNumber(0.5)));
+            }
+        });
+    }
+
+    @Override
+    public void onDisable() {
+
     }
 
     /**
      * Returns the nth term of the Taylor series (centered at 0) of e^x
      * @param n the term required (n >= 0).
      * @param x the real number at which the series is evaluated.
-     * @return
+     * @return the nth term of the series.
      */
     private NumberInterface getExpSeriesTerm(int n, NumberInterface x){
         return x.intPow(n).divide(this.getFunction("!").apply((new NaiveNumber(n)).promoteTo(x.getClass())));
@@ -123,17 +256,18 @@ public class StandardPlugin extends Plugin {
      * such that the error is at most maxError.
      * @param maxError Maximum error permissible (This should probably be positive.)
      * @param x where the function is evaluated.
-     * @return
+     * @return the number of terms needed to evaluated the exponential function.
      */
-    private int getNTermsExp(NumberInterface maxError, NumberInterface x){
-        //We need n such that x^(n+2) <= (n+1)! * maxError
+    private int getNTermsExp(NumberInterface maxError, NumberInterface x) {
+        //We need n such that |x^(n+1)| <= (n+1)! * maxError
         //The variables LHS and RHS refer to the above inequality.
         int n = 0;
-        NumberInterface LHS = x.intPow(2), RHS = maxError;
-        while(LHS.compareTo(RHS) > 0){
+        x = this.getFunction("abs").apply(x);
+        NumberInterface LHS = x, RHS = maxError;
+        while (LHS.compareTo(RHS) > 0) {
             n++;
             LHS = LHS.multiply(x);
-            RHS = RHS.multiply(new NaiveNumber(n).promoteTo(RHS.getClass()));
+            RHS = RHS.multiply(new NaiveNumber(n + 1).promoteTo(RHS.getClass()));
         }
         return n;
     }
@@ -157,7 +291,7 @@ public class StandardPlugin extends Plugin {
     /**
      * Returns the maximum error based on the precision of the class of number.
      * @param number Any instance of the NumberInterface in question (should return an appropriate precision).
-     * @return
+     * @return the maximum error.
      */
     private NumberInterface getMaxError(NumberInterface number){
         return (new NaiveNumber(10)).promoteTo(number.getClass()).intPow(-number.precision());

src/org/nwapw/abacus/tree/FunctionNode.java

@@ -0,0 +1,79 @@
+package org.nwapw.abacus.tree;
+
+import java.util.ArrayList;
+
+/**
+ * A node that represents a function call.
+ */
+public class FunctionNode extends TreeNode {
+
+    /**
+     * The name of the function being called
+     */
+    private String function;
+    /**
+     * The list of arguments to the function.
+     */
+    private ArrayList<TreeNode> children;
+
+    /**
+     * Creates a function node with no function.
+     */
+    private FunctionNode() { }
+
+    /**
+     * Creates a new function node with the given function name.
+     * @param function the function name.
+     */
+    public FunctionNode(String function){
+        this.function = function;
+        children = new ArrayList<>();
+    }
+
+    /**
+     * Gets the function name for this node.
+     * @return the function name.
+     */
+    public String getFunction() {
+        return function;
+    }
+
+    /**
+     * Adds a child to the end of this node's child list.
+     * @param node the child to add.
+     */
+    public void appendChild(TreeNode node){
+        children.add(node);
+    }
+
+    /**
+     * Adds a new child to the beginning of this node's child list.
+     * @param node the node to add.
+     */
+    public void prependChild(TreeNode node) {
+        children.add(0, node);
+    }
+
+    @Override
+    public <T> T reduce(Reducer<T> reducer) {
+        Object[] reducedChildren = new Object[children.size()];
+        for(int i = 0; i < reducedChildren.length; i++){
+            reducedChildren[i] = children.get(i).reduce(reducer);
+            if(reducedChildren[i] == null) return null;
+        }
+        return reducer.reduceNode(this, reducedChildren);
+    }
+
+    @Override
+    public String toString() {
+        StringBuilder buffer = new StringBuilder();
+        buffer.append(function);
+        buffer.append("(");
+        for(int i = 0; i < children.size(); i++){
+            buffer.append(children.get(i));
+            buffer.append(i == children.size() - 1 ? "" : ", ");
+        }
+        buffer.append(")");
+        return buffer.toString();
+    }
+}

src/org/nwapw/abacus/tree/NumberReducer.java

@@ -1,12 +1,24 @@
 package org.nwapw.abacus.tree;
 
+import org.nwapw.abacus.function.Function;
 import org.nwapw.abacus.number.NumberInterface;
 import org.nwapw.abacus.plugin.PluginManager;
 
+/**
+ * A reducer implementation that turns a tree into a single number.
+ * This is not always guaranteed to work.
+ */
 public class NumberReducer implements Reducer<NumberInterface> {
 
+    /**
+     * The plugin manager from which to draw the functions.
+     */
     private PluginManager manager;
 
+    /**
+     * Creates a new number reducer with the given plugin manager.
+     * @param manager the plugin manager.
+     */
     public NumberReducer(PluginManager manager){
         this.manager = manager;
     }
@@ -18,7 +30,17 @@ public class NumberReducer implements Reducer<NumberInterface> {
         } else if(node instanceof OpNode){
             NumberInterface left = (NumberInterface) children[0];
             NumberInterface right = (NumberInterface) children[1];
-            return manager.functionFor(((OpNode) node).getOperation()).apply(left, right);
+            Function function = manager.operatorFor(((OpNode) node).getOperation()).getFunction();
+            if(function == null) return null;
+            return function.apply(left, right);
+        } else if(node instanceof FunctionNode){
+            NumberInterface[] convertedChildren = new NumberInterface[children.length];
+            for(int i = 0; i < convertedChildren.length; i++){
+                convertedChildren[i] = (NumberInterface) children[i];
+            }
+            Function function = manager.functionFor(((FunctionNode) node).getFunction());
+            if(function == null) return null;
+            return function.apply(convertedChildren);
         }
         return null;
     }

src/org/nwapw/abacus/tree/OpNode.java

@@ -86,6 +86,7 @@ public class OpNode extends TreeNode {
     public <T> T reduce(Reducer<T> reducer) {
         T leftReduce = left.reduce(reducer);
         T rightReduce = right.reduce(reducer);
+        if(leftReduce == null || rightReduce == null) return null;
         return reducer.reduceNode(this, leftReduce, rightReduce);
     }
 
@@ -94,13 +95,6 @@ public class OpNode extends TreeNode {
         String leftString = left != null ? left.toString() : "null";
         String rightString = right != null ? right.toString() : "null";
 
-        if(right != null && right instanceof OpNode){
-            if(TreeNode.precedenceMap.get(((OpNode) right).getOperation()) >
-                    TreeNode.precedenceMap.get(operation)) {
-                rightString = "(" + rightString + ")";
-            }
-        }
-        
-        return leftString + operation + rightString;
+        return "(" + leftString + operation + rightString + ")";
     }
 }

src/org/nwapw/abacus/tree/TokenType.java

@@ -6,7 +6,8 @@ package org.nwapw.abacus.tree;
  */
 public enum TokenType {
 
-    ANY(0), OP(1), NUM(2), WORD(3), OPEN_PARENTH(4), CLOSE_PARENTH(5);
+    INTERNAL_FUNCTION_END(-1),
+    ANY(0), WHITESPACE(1), COMMA(2), OP(3), NUM(4), FUNCTION(5), OPEN_PARENTH(6), CLOSE_PARENTH(7);
 
     /**
      * The priority by which this token gets sorted.

src/org/nwapw/abacus/tree/TreeBuilder.java

@@ -0,0 +1,183 @@
+package org.nwapw.abacus.tree;
+
+import org.nwapw.abacus.function.OperatorAssociativity;
+import org.nwapw.abacus.lexing.Lexer;
+import org.nwapw.abacus.lexing.pattern.Match;
+import org.nwapw.abacus.lexing.pattern.Pattern;
+
+import java.util.*;
+
+/**
+ * The builder responsible for turning strings into trees.
+ */
+public class TreeBuilder {
+
+    /**
+     * The lexer used to get the input tokens.
+     */
+    private Lexer<TokenType> lexer;
+    /**
+     * The map of operator precedences.
+     */
+    private HashMap<String, Integer> precedenceMap;
+    /**
+     * The map of operator associativity.
+     */
+    private HashMap<String, OperatorAssociativity> associativityMap;
+
+    /**
+     * Comparator used to sort token types.
+     */
+    protected static Comparator<TokenType> tokenSorter = Comparator.comparingInt(e -> e.priority);
+
+    /**
+     * Creates a new TreeBuilder.
+     */
+    public TreeBuilder(){
+        lexer = new Lexer<TokenType>(){{
+            register(" ", TokenType.WHITESPACE);
+            register(",", TokenType.COMMA);
+            register("[0-9]+(\\.[0-9]+)?", TokenType.NUM);
+            register("\\(", TokenType.OPEN_PARENTH);
+            register("\\)", TokenType.CLOSE_PARENTH);
+        }};
+        precedenceMap = new HashMap<>();
+        associativityMap = new HashMap<>();
+    }
+
+    /**
+     * Registers a function with the TreeBuilder.
+     * @param function the function to register.
+     */
+    public void registerFunction(String function){
+        lexer.register(Pattern.sanitize(function), TokenType.FUNCTION);
+    }
+
+    /**
+     * Registers an operator with the TreeBuilder.
+     * @param operator the operator to register.
+     * @param precedence the precedence of the operator.
+     * @param associativity the associativity of the operator.
+     */
+    public void registerOperator(String operator, int precedence, OperatorAssociativity associativity){
+        lexer.register(Pattern.sanitize(operator), TokenType.OP);
+        precedenceMap.put(operator, precedence);
+        associativityMap.put(operator, associativity);
+    }
+
+    /**
+     * Tokenizes a string, converting it into matches
+     * @param string the string to tokenize.
+     * @return the list of tokens produced.
+     */
+    public ArrayList<Match<TokenType>> tokenize(String string){
+        return lexer.lexAll(string, 0, tokenSorter);
+    }
+
+    /**
+     * Rearranges tokens into a postfix list, using Shunting Yard.
+     * @param source the source string.
+     * @param from the tokens to be rearranged.
+     * @return the resulting list of rearranged tokens.
+     */
+    public ArrayList<Match<TokenType>> intoPostfix(String source, ArrayList<Match<TokenType>> from){
+        ArrayList<Match<TokenType>> output = new ArrayList<>();
+        Stack<Match<TokenType>> tokenStack = new Stack<>();
+        while(!from.isEmpty()){
+            Match<TokenType> match = from.remove(0);
+            TokenType matchType = match.getType();
+            if(matchType == TokenType.NUM) {
+                output.add(match);
+            } else if(matchType == TokenType.FUNCTION) {
+                output.add(new Match<>(0, 0, TokenType.INTERNAL_FUNCTION_END));
+                tokenStack.push(match);
+            } else if(matchType == TokenType.OP){
+                String tokenString = source.substring(match.getFrom(), match.getTo());
+                int precedence = precedenceMap.get(tokenString);
+                OperatorAssociativity associativity = associativityMap.get(tokenString);
+
+                while(!tokenStack.empty()) {
+                    Match<TokenType> otherMatch = tokenStack.peek();
+                    TokenType otherMatchType = otherMatch.getType();
+                    if(!(otherMatchType == TokenType.OP || otherMatchType == TokenType.FUNCTION)) break;
+
+                    if(otherMatchType == TokenType.OP){
+                        int otherPrecedence = precedenceMap.get(source.substring(otherMatch.getFrom(), otherMatch.getTo()));
+                        if(otherPrecedence < precedence ||
+                                (associativity == OperatorAssociativity.RIGHT && otherPrecedence == precedence)) {
+                            break;
+                        }
+                    }
+                    output.add(tokenStack.pop());
+                }
+                tokenStack.push(match);
+            } else if(matchType == TokenType.OPEN_PARENTH){
+                tokenStack.push(match);
+            } else if(matchType == TokenType.CLOSE_PARENTH || matchType == TokenType.COMMA){
+                while(!tokenStack.empty() && tokenStack.peek().getType() != TokenType.OPEN_PARENTH){
+                    output.add(tokenStack.pop());
+                }
+                if(tokenStack.empty()) return null;
+                if(matchType == TokenType.CLOSE_PARENTH){
+                    tokenStack.pop();
+                }
+            }
+        }
+        while(!tokenStack.empty()){
+            Match<TokenType> match = tokenStack.peek();
+            TokenType matchType = match.getType();
+            if(!(matchType == TokenType.OP || matchType == TokenType.FUNCTION)) return null;
+            output.add(tokenStack.pop());
+        }
+        return output;
+    }
+
+    /**
+     * Constructs a tree recursively from a list of tokens.
+     * @param source the source string.
+     * @param matches the list of tokens from the source string.
+     * @return the construct tree expression.
+     */
+    public TreeNode fromStringRecursive(String source, ArrayList<Match<TokenType>> matches){
+        if(matches.size() == 0) return null;
+        Match<TokenType> match = matches.remove(0);
+        TokenType matchType = match.getType();
+        if(matchType == TokenType.OP){
+            TreeNode right = fromStringRecursive(source, matches);
+            TreeNode left = fromStringRecursive(source, matches);
+            if(left == null || right == null) return null;
+            else return new OpNode(source.substring(match.getFrom(), match.getTo()), left, right);
+        } else if(matchType == TokenType.NUM){
+            return new NumberNode(Double.parseDouble(source.substring(match.getFrom(), match.getTo())));
+        } else if(matchType == TokenType.FUNCTION){
+            String functionName = source.substring(match.getFrom(), match.getTo());
+            FunctionNode node = new FunctionNode(functionName);
+            while(!matches.isEmpty() && matches.get(0).getType() != TokenType.INTERNAL_FUNCTION_END){
+                TreeNode argument = fromStringRecursive(source, matches);
+                if(argument == null) return null;
+                node.prependChild(argument);
+            }
+            if(matches.isEmpty()) return null;
+            matches.remove(0);
+            return node;
+        }
+        return null;
+    }
+
+    /**
+     * Creates a tree node from a string.
+     * @param string the string to create a node from.
+     * @return the resulting tree.
+     */
+    public TreeNode fromString(String string){
+        ArrayList<Match<TokenType>> matches = tokenize(string);
+        if(matches == null) return null;
+        matches.removeIf(m -> m.getType() == TokenType.WHITESPACE);
+        matches = intoPostfix(string, matches);
+        if(matches == null) return null;
+
+        Collections.reverse(matches);
+        return fromStringRecursive(string, matches);
+    }
+
+}

src/org/nwapw/abacus/tree/TreeNode.java

@@ -1,5 +1,6 @@
 package org.nwapw.abacus.tree;
 
+import org.nwapw.abacus.function.OperatorAssociativity;
 import org.nwapw.abacus.lexing.Lexer;
 import org.nwapw.abacus.lexing.pattern.Match;
 
@@ -11,133 +12,11 @@ import java.util.*;
 public abstract class TreeNode {
 
     /**
-     * The lexer used to lex tokens.
+     * The function that reduces a tree to a single vale.
+     * @param reducer the reducer used to reduce the tree.
+     * @param <T> the type the reducer produces.
+     * @return the result of the reduction, or null on error.
      */
-    protected static Lexer<TokenType> lexer = new Lexer<TokenType>(){{
-        register("\\+|-|\\*|/|^", TokenType.OP);
-        register("[0-9]+(\\.[0-9]+)?", TokenType.NUM);
-        register("[a-zA-Z]+", TokenType.WORD);
-        register("\\(", TokenType.OPEN_PARENTH);
-        register("\\)", TokenType.CLOSE_PARENTH);
-    }};
-    /**
-     * A map that maps operations to their precedence.
-     */
-    protected static HashMap<String, Integer> precedenceMap = new HashMap<String, Integer>(){{
-        put("+", 0);
-        put("-", 0);
-        put("*", 1);
-        put("/", 1);
-        put("^", 2);
-    }};
-    /**
-     * A map that maps operations to their associativity.
-     */
-    protected static HashMap<String, OperatorAssociativity> associativityMap =
-            new HashMap<String, OperatorAssociativity>() {{
-                put("+", OperatorAssociativity.LEFT);
-                put("-", OperatorAssociativity.LEFT);
-                put("*", OperatorAssociativity.LEFT);
-                put("/", OperatorAssociativity.LEFT);
-                put("^", OperatorAssociativity.RIGHT);
-            }};
-
-    /**
-     * Comparator used to sort token types.
-     */
-    protected static Comparator<TokenType> tokenSorter = Comparator.comparingInt(e -> e.priority);
-
-    /**
-     * Tokenizes a string, converting it into matches
-     * @param string the string to tokenize.
-     * @return the list of tokens produced.
-     */
-    public static ArrayList<Match<TokenType>> tokenize(String string){
-        return lexer.lexAll(string, 0, tokenSorter);
-    }
-
-    /**
-     * Rearranges tokens into a postfix list, using Shunting Yard.
-     * @param source the source string.
-     * @param from the tokens to be rearranged.
-     * @return the resulting list of rearranged tokens.
-     */
-    public static ArrayList<Match<TokenType>> intoPostfix(String source, ArrayList<Match<TokenType>> from){
-        ArrayList<Match<TokenType>> output = new ArrayList<>();
-        Stack<Match<TokenType>> tokenStack = new Stack<>();
-        while(!from.isEmpty()){
-            Match<TokenType> match = from.remove(0);
-            if(match.getType() == TokenType.NUM) {
-                output.add(match);
-            } else if(match.getType() == TokenType.OP){
-                String tokenString = source.substring(match.getFrom(), match.getTo());
-                int precedence = precedenceMap.get(tokenString);
-                OperatorAssociativity associativity = associativityMap.get(tokenString);
-
-                while(!tokenStack.empty()) {
-                    Match<TokenType> otherMatch = tokenStack.peek();
-                    if(otherMatch.getType() != TokenType.OP) break;
-
-                    int otherPrecdence = precedenceMap.get(source.substring(otherMatch.getFrom(), otherMatch.getTo()));
-                    if(otherPrecdence < precedence ||
-                            (associativity == OperatorAssociativity.RIGHT && otherPrecdence == precedence)) {
-                        break;
-                    }
-                    output.add(tokenStack.pop());
-                }
-                tokenStack.push(match);
-            } else if(match.getType() == TokenType.OPEN_PARENTH){
-                tokenStack.push(match);
-            } else if(match.getType() == TokenType.CLOSE_PARENTH){
-                while(!tokenStack.empty() && tokenStack.peek().getType() != TokenType.OPEN_PARENTH){
-                    output.add(tokenStack.pop());
-                }
-                if(tokenStack.empty()) return null;
-                tokenStack.pop();
-            }
-        }
-        while(!tokenStack.empty()){
-            if(!(tokenStack.peek().getType() == TokenType.OP)) return null;
-            output.add(tokenStack.pop());
-        }
-        return output;
-    }
-
-    /**
-     * Constructs a tree recursively from a list of tokens.
-     * @param source the source string.
-     * @param matches the list of tokens from the source string.
-     * @return the construct tree expression.
-     */
-    public static TreeNode fromStringRecursive(String source, ArrayList<Match<TokenType>> matches){
-        if(matches.size() == 0) return null;
-        Match<TokenType> match = matches.remove(0);
-        if(match.getType() == TokenType.OP){
-            TreeNode right = fromStringRecursive(source, matches);
-            TreeNode left = fromStringRecursive(source, matches);
-            if(left == null || right == null) return null;
-            else return new OpNode(source.substring(match.getFrom(), match.getTo()), left, right);
-        } else if(match.getType() == TokenType.NUM){
-            return new NumberNode(Double.parseDouble(source.substring(match.getFrom(), match.getTo())));
-        }
-        return null;
-    }
-
-    /**
-     * Creates a tree node from a string.
-     * @param string the string to create a node from.
-     * @return the resulting tree.
-     */
-    public static TreeNode fromString(String string){
-        ArrayList<Match<TokenType>> matches = tokenize(string);
-        if(matches == null) return null;
-        matches = intoPostfix(string, matches);
-        if(matches == null) return null;
-
-        Collections.reverse(matches);
-        return fromStringRecursive(string, matches);
-    }
-
     public abstract <T> T reduce(Reducer<T> reducer);
 
 }

src/org/nwapw/abacus/window/HistoryTableModel.java

@@ -7,20 +7,34 @@ import javax.swing.table.AbstractTableModel;
 import javax.swing.table.TableModel;
 import java.util.ArrayList;
 
+/**
+ * A table model to store data about the history of inputs
+ * in the calculator.
+ */
 public class HistoryTableModel extends AbstractTableModel {
 
+    /**
+     * Static array used to get the column names.
+     */
     public static final String[] COLUMN_NAMES = {
             "Input",
             "Parsed Input",
             "Output"
     };
 
+    /**
+     * Static array used to get the class of each column.
+     */
     public static final Class[] CLASS_TYPES = {
             String.class,
             TreeNode.class,
             String.class
     };
 
+    /**
+     * Class used specifically to hold data about
+     * the previous entries into the calculator.
+     */
     public static class HistoryEntry {
         public String input;
         public TreeNode parsedInput;
@@ -40,17 +54,27 @@ public class HistoryTableModel extends AbstractTableModel {
         }
     }
 
+    /**
+     * The list of entries.
+     */
     ArrayList<HistoryEntry> entries;
 
+    /**
+     * Creates a new empty history table model
+     */
     public HistoryTableModel() {
         entries = new ArrayList<>();
     }
 
+    /**
+     * Adds an entry to the model.
+     * @param entry the entry to add.
+     */
     public void addEntry(HistoryEntry entry){
         entries.add(entry);
     }
 
-        @Override
+    @Override
     public int getRowCount() {
         return entries.size();
     }
@@ -80,18 +104,4 @@ public class HistoryTableModel extends AbstractTableModel {
         return entries.get(rowIndex).nthValue(columnIndex);
     }
 
-    @Override
-    public void setValueAt(Object aValue, int rowIndex, int columnIndex) {
-        return;
-    }
-
-    @Override
-    public void addTableModelListener(TableModelListener l) {
-
-    }
-
-    @Override
-    public void removeTableModelListener(TableModelListener l) {
-
-    }
 }

src/org/nwapw/abacus/window/Window.java

@@ -1,7 +1,11 @@
 package org.nwapw.abacus.window;
 
+import org.nwapw.abacus.function.Operator;
+import org.nwapw.abacus.number.NumberInterface;
+import org.nwapw.abacus.plugin.PluginListener;
 import org.nwapw.abacus.plugin.PluginManager;
 import org.nwapw.abacus.tree.NumberReducer;
+import org.nwapw.abacus.tree.TreeBuilder;
 import org.nwapw.abacus.tree.TreeNode;
 
 import javax.swing.*;
@@ -14,20 +18,30 @@ import java.awt.event.MouseEvent;
 /**
  * The main UI window for the calculator.
  */
-public class Window extends JFrame {
+public class Window extends JFrame implements PluginListener {
 
     private static final String CALC_STRING = "Calculate";
-    private static final String SELECT_STRING = "Select";
     private static final String SYNTAX_ERR_STRING = "Syntax Error";
+    private static final String EVAL_ERR_STRING = "Evaluation Error";
     private static final String NUMBER_SYSTEM_LABEL = "Number Type:";
     private static final String FUNCTION_LABEL = "Functions:";
 
+    /**
+     * Array of Strings to which the "calculate" button's text
+     * changes. For instance, in the graph tab, the name will
+     * be "Graph" and not "Calculate".
+     */
     private static final String[] BUTTON_NAMES = {
             CALC_STRING,
             CALC_STRING
     };
 
-    private static boolean[] BUTTON_ENABLED = {
+    /**
+     * Array of booleans that determine whether the input
+     * field and the input button are enabled at a particular
+     * index.
+     */
+    private static boolean[] INPUT_ENABLED = {
             true,
             false
     };
@@ -36,6 +50,10 @@ public class Window extends JFrame {
      * The plugin manager used to retrieve functions.
      */
     private PluginManager manager;
+    /**
+     * The builder used to construct the parse trees.
+     */
+    private TreeBuilder builder;
     /**
      * The reducer used to evaluate the tree.
      */
@@ -112,18 +130,28 @@ public class Window extends JFrame {
      * Action listener that causes the input to be evaluated.
      */
     private ActionListener evaluateListener = (event) -> {
-        TreeNode parsedExpression = TreeNode.fromString(inputField.getText());
+        if(builder == null) return;
+        TreeNode parsedExpression = builder.fromString(inputField.getText());
         if(parsedExpression == null){
             lastOutputArea.setText(SYNTAX_ERR_STRING);
             return;
         }
-        lastOutput = parsedExpression.reduce(reducer).toString();
+        NumberInterface numberInterface = parsedExpression.reduce(reducer);
+        if(numberInterface == null){
+            lastOutputArea.setText(EVAL_ERR_STRING);;
+            return;
+        }
+        lastOutput = numberInterface.toString();
         historyModel.addEntry(new HistoryTableModel.HistoryEntry(inputField.getText(), parsedExpression, lastOutput));
         historyTable.invalidate();
         lastOutputArea.setText(lastOutput);
         inputField.setText("");
     };
 
+    /**
+     * Array of listeners that tell the input button how to behave
+     * at a given input tab.
+     */
     private ActionListener[] listeners = {
             evaluateListener,
             null
@@ -136,6 +164,7 @@ public class Window extends JFrame {
     public Window(PluginManager manager){
         this();
         this.manager = manager;
+        manager.addListener(this);
         reducer = new NumberReducer(manager);
     }
 
@@ -198,7 +227,7 @@ public class Window extends JFrame {
         pane.add("Settings", settingsPanel);
         pane.addChangeListener(e -> {
             int selectionIndex = pane.getSelectedIndex();
-            boolean enabled = BUTTON_ENABLED[selectionIndex];
+            boolean enabled = INPUT_ENABLED[selectionIndex];
             ActionListener listener = listeners[selectionIndex];
             inputEnterButton.setText(BUTTON_NAMES[selectionIndex]);
             inputField.setEnabled(enabled);
@@ -231,4 +260,21 @@ public class Window extends JFrame {
             }
         });
     }
+
+    @Override
+    public void onLoad(PluginManager manager) {
+        builder = new TreeBuilder();
+        for(String function : manager.getAllFunctions()){
+            builder.registerFunction(function);
+        }
+        for(String operator : manager.getAllOperators()){
+            Operator operatorObject = manager.operatorFor(operator);
+            builder.registerOperator(operator, operatorObject.getPrecedence(), operatorObject.getAssociativity());
+        }
+    }
+
+    @Override
+    public void onUnload(PluginManager manager) {
+        builder = null;
+    }
 }